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Research Scientist/Engineer 3

University of Washington Medical CenterSeattle, WA
$81,600 - $108,000Onsite

About The Position

The Research Scientist/Engineer 3 will play a critical role in supporting and advancing structural characterization efforts at the Institute for Protein Design (IPD) at the University of Washington. By meeting the growing demand for negative-stain and cryo-EM structural characterization, this position directly impacts the success of multiple research projects and collaborative initiatives, contributing to the IPD’s mission to design proteins to address global challenges. The IPD is a world-leading research center focused on creating new proteins that solve challenges in medicine, technology, and sustainability. Founded by Nobel laureate David Baker, the IPD fosters a collaborative, interdisciplinary environment, bringing together expertise in computational design, biochemistry, genome sciences, and structural biology. Current projects include the development of novel therapeutics, vaccines, enzymes, and protein-based nanomaterials.

Requirements

  • Bachelor's Degree in Biochemistry, Biology, Physics or related field and 4 years of relevant experience with electron microscopy-based sample characterization.
  • Expertise in single-particle analysis workflows for cryo-EM.
  • Proficiency in cryo-EM data processing software such as cryoSPARC, Relion, EMAN, Dynamo, and/or IMOD, including experience with tools commonly used for tomography data processing.
  • Proficiency in structural modeling and validation software such as Phenix, Rosetta, Chimera, ISOLDE, Namdinator, and COOT.
  • Strong experience working in command-line environments (Linux/Unix terminals)
  • Proven experience mentoring and training researchers in cryo-EM and ns-EM techniques.
  • Strong technical and scientific problem-solving skills.
  • Exceptional ability to multitask and manage multiple projects simultaneously.
  • A collaborative mindset with a strong desire to work as part of a multidisciplinary team.

Nice To Haves

  • Doctorate degree in biochemistry, biology, or any other relevant field preferred.
  • At least 4 years of hands-on experience in cryo-electron microscopy, including sample preparation, data collection, image processing, and structure building.
  • Experience with cryoEM structure determination of small (sub-100 kDa) protein structures.
  • Familiarity with managing and maintaining cryo-EM instrumentation.
  • Experience with protein expression, purification, and cryo-EM sample optimization.
  • Strong understanding of structural biology principles and their application to protein design and analysis.
  • Experience with grant writing or securing funding for scientific projects.
  • Ability to publish high-quality research in peer-reviewed journals and present findings at conferences.
  • Experience implementing or contributing to automated data collection workflows for cryo-EM.
  • Familiarity with high-performance computing environments for large-scale data processing.

Responsibilities

  • Conduct structural studies of computationally designed proteins and protein nanomaterials using negative-stain EM and cryo-EM single-particle analysis (with an emphasis on sub-100 kDa protein structure determination).
  • Process and analyze EM data, perform 3D reconstructions, and build and validate structural models.
  • Collaborate with internal and external researchers to provide structural insights into protein design projects.
  • Prepare manuscripts, generate publication-quality figures, and contribute to the communication of research findings through presentations and written documentation.
  • Train and mentor junior researchers, including postdoctoral fellows, graduate students, and staff, in negative-stain EM and cryo-EM methodologies.
  • Develop and maintain standard operating procedures for negative-stain and cryo-EM workflows.
  • Manage and maintain IPD-specific EM equipment, including three Talos L120C microscopes, a negative-stain sample preparation station, and a cryo-EM sample preparation station which includes a Vitrobot Mark IV.
  • Coordinate service and maintenance schedules for IPD-specific instruments and ensure optimal performance.
  • Work with department-owned instrumentation, including the on-site 200 kV Glacios, 300 kV Krios, 120 kV T-12 Spirit, and Aquilos for FIB-milling, as as needed to support IPD research and collaborative efforts.
  • Coordinate the scheduling, operation, and remote utilization of Cryo-EM instruments at national centers, ensuring efficient use of IPD-allocated resources and overseeing the shipment of samples to support research objectives.

Benefits

  • For information about benefits for this position, visit https://www.washington.edu/jobs/benefits-for-uw-staff/

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