Principal Scientist – Oligonucleotide & AOC Analytical Chemistry

Atrium Therapeutics•San Diego, CA
•$185,000 - $205,000

About The Position

Atrium Therapeutics is seeking an experienced analytical scientist at the Principal Scientist level to build and lead analytical characterization of antibody-oligonucleotide conjugates (AOCs) designed to deliver siRNA payloads selectively to cardiomyocytes. The scientist will develop phase-appropriate analytical methods for AOC drug substance, drug product, and intermediates, including antibody, siRNA duplex, and linker-oligonucleotide. The role will generate data that informs conjugation chemistry, process development, stability, and specifications for IND-enabling and early clinical programs. The role is primarily lab-based and will help establish analytical capabilities within Chemistry & Technical Development. The scientist will partner with Biology, Developmental Sciences, external CDMOs, and contract testing laboratories.

Requirements

  • Ph.D. in analytical chemistry, biochemistry, chemistry, or a related field with 8+ years of relevant industry experience; or M.S. with 12+ years; or B.S. with 14+ years.
  • Demonstrated analytical leadership on AOC, ADC, or oligonucleotide conjugate programs through IND or later.
  • Expert hands-on experience with HPLC/UHPLC (SEC, HIC, IEX, IP-RP) and LC-MS of proteins and/or oligonucleotides, including data processing and deconvolution.
  • Experience with capillary electrophoresis (CE-SDS, icIEF) and spectroscopic quantitation.
  • Experience with method transfers and impurity characterization through all development phases.
  • Strong problem-solving skills, attention to detail, and clear written and oral communication in a fast-paced, cross-disciplinary team.
  • Ability to manage multiple projects independently, prioritize competing deliverables, and meet timelines in a fast-paced, cross-functional environment.

Nice To Haves

  • Familiarity with antibody chemistries and their analytical signatures.
  • Experience with SEC-MALS, native MS, peptide mapping, or hybridization-based and ligand-binding assays.
  • Publication or patent record in bioconjugate or oligonucleotide analytics.
  • Experience with statistical software such as JMP or Design-Expert for data analysis.

Responsibilities

  • Lead efforts to build internal analytical capabilities and laboratory infrastructure.
  • Develop, optimize, qualify, and transfer analytical methods for AOCs, oligonucleotide intermediates, and related materials.
  • Design and execute forced-degradation and development stability studies, and elucidate degradation pathways for antibody and oligonucleotide components.
  • Serve as analytical lead and provide in-process and release-type analytical testing of oligonucleotides and conjugates in support of discovery, process development, and GLP studies.
  • Partner with oligonucleotide and AOC bioconjugation teams to develop analytical methods for characterizing and quantifying process intermediates and impurities.
  • Evaluate and implement new analytical technologies to strengthen oligonucleotide and AOC characterization.
  • Maintain rigorous electronic lab notebook records and present data and recommendations to project teams.
  • Author and review method SOPs, technical reports, and analytical sections supporting GLP studies and regulatory submissions.

Benefits

  • Stock options and RSUs.
  • 401(k) with employer match.
  • Wellness program including medical, dental, vision, and LTD coverage.
  • Unlimited time off, including summer and winter breaks.
  • Learning and development programming, job-specific industry training opportunities, and education reimbursement.

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What This Job Offers

Job Type

Full-time

Career Level

Principal

Education Level

Ph.D. or professional degree

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