Genomics/Biomarker Resource

Saxon Global • Atlanta, GA

4d

About The Position

This role requires a deep understanding of genomics and molecular biomarkers, focusing on the mapping of lab-provided results to standardized models. Key responsibilities include ensuring data quality, validation, and lineage, particularly within a multi-month onboarding cycle. Proficiency in dbt for transformation-as-code and Databricks/Lakehouse for data exploration and publishing at scale is essential. The role also involves expertise in data modeling and mapping heterogeneous genomics inputs into a canonical molecular biomarker module, handling both semi-structured (JSON) and structured data.

Requirements

• Understanding of NGS/genomics concepts (variants, biomarkers, panels).
• Experience defining validation rules, reconciliation checks, and traceability.
• Proficiency in dbt for building, versioning, and testing repeatable transformation logic.
• Strong experience with Databricks, Delta tables, and Lakehouse patterns.
• Expertise in data modeling and data mapping.
• Hands-on experience mapping heterogeneous genomics inputs (JSON, multi-table structured feeds) into a canonical molecular biomarker module.
• Ability to parse and validate JSON-based lab documents.
• Ability to parse and validate fully structured enterprise datasets.

Responsibilities

• Map lab-provided results to standardized molecular biomarker models.
• Define validation rules and reconciliation checks for biomarker mappings.
• Ensure clinical accuracy and compliance of biomarker mappings.
• Build, version, and test repeatable transformation logic for biomarker normalization and CDM alignment using dbt.
• Explore, transform, validate, and publish genomics data at scale using Databricks, Delta tables, and Lakehouse patterns.
• Map heterogeneous genomics inputs (JSON, multi-table structured feeds) into a canonical molecular biomarker module.
• Parse and validate JSON-based lab documents and fully structured enterprise datasets.

What This Job Offers

• Career Level: Senior
• Education Level: No Education Listed