Bioinformatics Scientist II

Foundation Medicine•Boston, MA

2h•$129,840 - $162,300•Hybrid

About The Position

The Bioinformatics Scientist II develops and supports clinical trial and companion diagnostics (CDx) biomarker strategy through advanced analytical and scientific contributions. This role applies bioinformatics and cancer biology expertise to contribute to biomarker rule development, analytical methods, and workflow components that support consistent, scalable clinical reporting. The incumbent provides scientific, technical, and directional contributions for designated projects on an interdisciplinary team focused on making a clinical impact through advanced analysis at large scale. The Bioinformatics Scientist II is also responsible for supporting novel biomarker and companion diagnostics development by mining and analyzing various types of data generated during the product development and validation process.

Requirements

Master’s degree in Biochemistry, Bioinformatics, Computational Biology, Computer Science or similar discipline
2+ years of relevant industry or academic experience
Proficiency with scripting for data analysis using Python, R, or similar

Nice To Haves

PhD degree in Biochemistry, Bioinformatics, Computational Biology, Computer Science or similar discipline
3+ years of industry experience
Strong scientific understanding of molecular biology and genomics
Experience in cancer research, including a working understanding of computational approaches for cancer genome analysis
Knowledge of predictive biomarkers for cancer therapy
Knowledge of clinical trial and CDx biomarker strategy, processes, and requirements
Knowledge and experience with Next-Generation Sequencing (NGS)
Strong analytical skills with experience in genomic data analysis
Demonstrated ability to work independently and contribute to team projects
Ability to work in a multidisciplinary, fast-paced, dynamic, and results-oriented environment
Understanding of HIPAA and the importance of patient data privacy
Commitment to reflect FMI’s values: Integrity, Courage, and Passion

Responsibilities

Partners within an interdisciplinary team of Bioinformatics Scientists, Biostatisticians, Laboratory Scientists, Regulatory experts, and other teams to support the development and implementation of biomarker strategy for clinical trials and CDx
Contributes to biomarker implementation by supporting rule development and technical execution across studies
Leads biomarker scoping for individual studies by evaluating feasibility of biomarker definitions, performing data analyses to inform decisions, and providing technical input in partner-facing scoping discussions
Identifies opportunities to improve existing biomarker workflows and documentation, and provides technical input to enhance quality and efficiency
Contributes to development, refinement, and consistent application of biomarker guidance across studies
Contributes scientific input to biomarker strategy discussions and evaluates feasibility across studies
Develops and executes analytical and validation approaches for biomarker analyses
Executes analytical work in support of product development, including method development, feasibility assessment, and evaluation of biomarker applicability
Provides technical input to biopharma partner-specific discussions related to biomarker analyses and implementation
Provides technical input to regulatory documentation and participates in regulatory discussions related to biomarker analyses
Contributes to biomarker inquiry support by independently resolving standard inquiries, performing analyses, and assisting with triage and documentation of incoming questions
Contributes to and improves shared tools and datasets, ensuring they are accurate, reusable, and well-documented
Mentors Scientist I team members and supports team coordination and documentation needs
Presents scientific and technical data to colleagues in a clear and cohesive manner
Other duties as assigned
Comply with FMI's attendance policies