Machine Learning Scientist / Senior Machine Learning Scientist
About The Position
Calico is seeking a machine learning scientist to join a research group investigating how genome sequence determines regulatory function and how dysregulation of these programs drives aging. We develop sequence-based deep learning models that predict gene expression, chromatin accessibility, and other functional readouts directly from DNA. We use these models to interpret human genetic variation, map causal regulatory mechanisms, and identify promising intervention points. This work builds on a sustained research program at the intersection of deep learning and regulatory genomics.
Requirements
- PhD in computational biology, bioinformatics, computer science, or a related field, and 0-5 years (for Scientist level) or 5+ years (for Senior Scientist level) of additional training in an industry or academic setting, with a strong publication record
- Deep expertise in machine learning with solid grounding in algorithms, data structures, and statistics
- Substantive knowledge of molecular biology and genetics; familiarity with genomic data types and public data resources
- Hands-on experience analyzing genomics sequencing data, ideally including single-cell assays
- Fluency with modern AI-assisted development and research tools (e.g., LLM-based coding assistants, literature synthesis), with a habit of proactively integrating new tools to accelerate scientific workflows
- A collaborative disposition, strong follow-through, and comfort working at the interface of computation and experiment
- Must be willing to work onsite at least four days per week
Responsibilities
- Design and train deep learning models for biological sequence analysis, with emphasis on gene regulation, single-cell genomics, and variant interpretation
- Partner with experimental scientists to connect model predictions to biological mechanisms — designing validation experiments, analyzing large-scale genomics data, and translating computational findings into actionable biological insights
- Communicate research through publications, open-source software, and public-facing tools
Benefits
- two annual cash bonuses
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What This Job Offers
Job Type
Full-time
Career Level
Entry Level
Education Level
Ph.D. or professional degree
