Bioinformatician A/B

University of Pennsylvania

21d

About The Position

The Human Pancreas Analysis Program (https://hpap.pmacs.upenn.edu/) and Faryabi Lab (https://faryabilab.com) seeking multiple motivated bioinformaticians. Successful candidate will be part of an enthusiastic and goal-oriented team to advance our understanding of aberrant gene expression regulation. The projects are supported by National Cancer Institute, Human Pancreatic Analysis Program (HPAP), and Susan G Komen and use the latest genomic and imaging technologies to generate multiple data modalities probing various aspects of cancer epigenomes. Duties include: (1) contributing to development and testing of solutions for data integration, (2) contributing to maintenance of genomic and imaging data analysis pipelines, (3) collaborating with experimental scientists to explore and interpret various genomic and epigenomic data types. The lab is a core member of Penn Epigenetics Institute, Abramson Cancer Center, and Institute for Biomedical Informatics, which together provides a rich multi-disciplinary environment for individuals interesting in computational and chromatin biology. In addition to the above the B level will be responsible for development of genomic and imaging chromatin conformation data analysis pipelines. Position is Contingent upon funding

Requirements

Bioinformatician A: Bachelor’s Degree in computational or life sciences with at least 3 years of relevant experience or an equivalent combination of education and experience is required.
Bioinformatician B: Master’s Degree in computational or life sciences with at least 3 years of relevant experience or an equivalent combination of education and experience is required.
Proficiency in Python, and R programing is required.
Active interest in bioinformatics, genomics, data visualization, or machine learning applications is required.
Basic system administration basic knowledge is required.

Nice To Haves

Experience with data visualization and/or server-side programming such as PHP, Bash, node.js, D3.js are preferred.
Experience working with large genomic sequence data is preferred.
Ability to write clear, concise, and efficient code with documentation.

Responsibilities

Contributing to development and testing of solutions for data integration, including data from single cell, and epigenomic assays.
In addition to the above the B level will be responsible for development of genomic and imaging chromatin conformation data analysis pipelines.
Contributing to maintenance of genomic and imaging data analysis pipelines, including data from chromatin conformation, 3D spatial Oligopiant imaging, and super-resolution microscopy.
Collaborating with experimental scientists to explore and interpret various genomic and epigenomic data types.
Participation in lab and departmental meetings and discussions.
Other duties as assigned

Benefits

Penn offers comprehensive medical, prescription, behavioral health, dental, vision, and life insurance benefits to protect you and your family’s health and welfare. You can also use flexible spending accounts to pay for eligible health care and dependent care expenses with pre-tax dollars.
Take advantage of Penn's exceptional tuition benefits. You, your spouse, and your dependent children can get tuition assistance here at Penn. Your dependent children are also eligible for tuition assistance at other institutions.
Penn offers generous retirement plans to help you save for your future. Penn’s Basic, Matching, and Supplemental retirement plans allow you to save for retirement on a pre-tax or Roth basis. Choose from a wide variety of investment options through TIAA and Vanguard.
Penn provides you with a substantial amount of time away from work during the course of the year. This allows you to relax, take vacations, attend to personal affairs, recover from illness or injury, spend time with family—whatever your personal needs may be.
In partnership with Genworth Financial, Penn offers faculty and staff (and your eligible family members) long-term care insurance to help you cover some of the costs of long-term care services received at home, in the community or in a nursing facility. If you apply when you’re newly hired, you won’t have to provide proof of good health or be subject to underwriting requirements. Eligible family members must always provide proof of good health and are subject to underwriting.
Penn is committed to supporting our faculty and staff as they balance the competing demands of work and personal life. That’s why we offer a wide variety of programs and resources to help you care for your health, your family, and your work-life balance.
Penn provides an array of resources to help you advance yourself personally and professionally.
As a member of the Penn community, you have access to a wide range of University resources as well as cultural and recreational activities. Take advantage of the University’s libraries and athletic facilities, or visit our arboretum and art galleries. There’s always something going on at Penn, whether it’s a new exhibit at the Penn Museum, the latest music or theater presentation at the Annenberg Center, or the Penn Relays at Franklin Field to name just a few examples. As a member of the Penn community, you’re right in the middle of the excitement—and you and your family can enjoy many of these activities for free.
From arts and entertainment to transportation and mortgages, you'll find great deals for University faculty and staff. Not only do Penn arts and cultural centers and museums offer free and discounted admission and memberships to faculty and staff. You can also enjoy substantial savings on other goods and services such as new cars from Ford and General Motors, cellular phone service plans, movie tickets, and admission to theme parks.
Flexible work options offer creative approaches for completing work while promoting balance between work and personal commitments. These approaches involve use of non-traditional work hours, locations, and/or job structures.
Penn offers a forgivable loan for eligible employees interested in buying a home or currently residing in West Philadelphia, which can be used for closing costs or home improvements.
Penn will reimburse eligible employees on qualified expenses in connection with the legal adoption of an eligible child, such as travel or court fees, for up to two adoptions in your household.